FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | lane2_Index15_2.fq |
| File type | Conventional base calls |
| Encoding | Illumina 1.5 |
| Total Sequences | 24825102 |
| Filtered Sequences | 0 |
| Sequence length | 90 |
| %GC | 49 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[WARN]](Icons/warning.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCAGG | 5152765 | 2.5721073 | 5.1828303 | 1 |
| GAAGA | 5267825 | 2.5614722 | 5.098311 | 2 |
| CCTGG | 5141175 | 2.5527825 | 6.167882 | 1 |
| CTTCT | 5421475 | 2.5121467 | 5.405416 | 1 |
| CTGGA | 4973715 | 2.4374583 | 8.821981 | 1 |
| TCCAG | 4885840 | 2.356004 | 5.694127 | 2 |
| CTCCT | 4875765 | 2.3012447 | 7.4853687 | 1 |
| CTGGG | 4497860 | 2.2697442 | 8.411634 | 1 |
| CAGGA | 4524055 | 2.2288527 | 5.483477 | 1 |
| CTTCA | 4729855 | 2.203295 | 5.6669617 | 1 |
| CCCAG | 4453675 | 2.1874986 | 7.2825522 | 1 |
| CTCCA | 4588600 | 2.1771958 | 8.034852 | 1 |
| CAGAA | 4399535 | 2.1049685 | 5.0188565 | 1 |
| CTCTG | 4252395 | 2.0397317 | 6.2557945 | 1 |
| CTGGC | 3791065 | 1.8824035 | 5.3262525 | 1 |
| TGGAA | 3855035 | 1.8646158 | 5.272345 | 2 |
| CTGAA | 3888410 | 1.8506044 | 5.352962 | 1 |
| CTCAG | 3622610 | 1.7468611 | 6.10651 | 1 |
| CTGGT | 3406195 | 1.6604604 | 5.0249214 | 1 |
| CTTGG | 3353445 | 1.6347457 | 5.2698855 | 1 |